[ol7_developer_EPEL] python2-ProDy-1.9.4-0.1.el7.x86_64

This is ProDy Python2 package for protein structure, dynamics,
and sequence analysis.  It allows for comparative analysis and modeling of
protein structural dynamics and sequence co-evolution.  Fast and flexible ProDy
API is for interactive usage as well as application development.  ProDy also
comes with several analysis applications and a graphical user interface for
visual analysis.
- Visit http://www.csb.pitt.edu/ProDy/ -

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• /

  • usr

    • bin

      • evol

      • evol-2

      • evol-2.7

      • prody

      • prody-2

      • prody-2.7

      • python2.7-evol

      • python2.7-prody

    • lib64

      • python2.7

        • site-packages

          • ProDy-1.9.4-py2.7.egg-info

          • prody

            • __init__.py

            • __init__.pyc

            • __init__.pyo

            • apps

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • apptools.py

              • apptools.pyc

              • apptools.pyo

              • evol_apps

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • evol_coevol.py

                • evol_coevol.pyc

                • evol_coevol.pyo

                • evol_conserv.py

                • evol_conserv.pyc

                • evol_conserv.pyo

                • evol_fetch.py

                • evol_fetch.pyc

                • evol_fetch.pyo

                • evol_filter.py

                • evol_filter.pyc

                • evol_filter.pyo

                • evol_merge.py

                • evol_merge.pyc

                • evol_merge.pyo

                • evol_occupancy.py

                • evol_occupancy.pyc

                • evol_occupancy.pyo

                • evol_rankorder.py

                • evol_rankorder.pyc

                • evol_rankorder.pyo

                • evol_refine.py

                • evol_refine.pyc

                • evol_refine.pyo

                • evol_search.py

                • evol_search.pyc

                • evol_search.pyo

              • prody_apps

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • nmaoptions.py

                • nmaoptions.pyc

                • nmaoptions.pyo

                • prody_align.py

                • prody_align.pyc

                • prody_align.pyo

                • prody_anm.py

                • prody_anm.pyc

                • prody_anm.pyo

                • prody_biomol.py

                • prody_biomol.pyc

                • prody_biomol.pyo

                • prody_blast.py

                • prody_blast.pyc

                • prody_blast.pyo

                • prody_catdcd.py

                • prody_catdcd.pyc

                • prody_catdcd.pyo

                • prody_contacts.py

                • prody_contacts.pyc

                • prody_contacts.pyo

                • prody_eda.py

                • prody_eda.pyc

                • prody_eda.pyo

                • prody_fetch.py

                • prody_fetch.pyc

                • prody_fetch.pyo

                • prody_gnm.py

                • prody_gnm.pyc

                • prody_gnm.pyo

                • prody_pca.py

                • prody_pca.pyc

                • prody_pca.pyo

                • prody_select.py

                • prody_select.pyc

                • prody_select.pyo

            • atomic

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • atom.py

              • atom.pyc

              • atom.pyo

              • atomgroup.py

              • atomgroup.pyc

              • atomgroup.pyo

              • atomic.py

              • atomic.pyc

              • atomic.pyo

              • atommap.py

              • atommap.pyc

              • atommap.pyo

              • bond.py

              • bond.pyc

              • bond.pyo

              • chain.py

              • chain.pyc

              • chain.pyo

              • fields.py

              • fields.pyc

              • fields.pyo

              • flags.py

              • flags.pyc

              • flags.pyo

              • functions.py

              • functions.pyc

              • functions.pyo

              • hierview.py

              • hierview.pyc

              • hierview.pyo

              • pointer.py

              • pointer.pyc

              • pointer.pyo

              • residue.py

              • residue.pyc

              • residue.pyo

              • segment.py

              • segment.pyc

              • segment.pyo

              • select.py

              • select.pyc

              • select.pyo

              • selection.py

              • selection.pyc

              • selection.pyo

              • subset.py

              • subset.pyc

              • subset.pyo

            • chromatin

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • cluster.py

              • cluster.pyc

              • cluster.pyo

              • functions.py

              • functions.pyc

              • functions.pyo

              • hic.py

              • hic.pyc

              • hic.pyo

              • norm.py

              • norm.pyc

              • norm.pyo

            • database

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • pfam.py

              • pfam.pyc

              • pfam.pyo

            • dynamics

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • analysis.py

              • analysis.pyc

              • analysis.pyo

              • anm.py

              • anm.pyc

              • anm.pyo

              • bbenm.py

              • bbenm.pyc

              • bbenm.pyo

              • compare.py

              • compare.pyc

              • compare.pyo

              • editing.py

              • editing.pyc

              • editing.pyo

              • entropy.py

              • entropy.pyc

              • entropy.pyo

              • exanm.py

              • exanm.pyc

              • exanm.pyo

              • functions.py

              • functions.pyc

              • functions.pyo

              • gamma.py

              • gamma.pyc

              • gamma.pyo

              • gnm.py

              • gnm.pyc

              • gnm.pyo

              • heatmapper.py

              • heatmapper.pyc

              • heatmapper.pyo

              • hitcommute.py

              • hitcommute.pyc

              • hitcommute.pyo

              • mode.py

              • mode.pyc

              • mode.pyo

              • modeset.py

              • modeset.pyc

              • modeset.pyo

              • nma.py

              • nma.pyc

              • nma.pyo

              • nmdfile.py

              • nmdfile.pyc

              • nmdfile.pyo

              • pca.py

              • pca.pyc

              • pca.pyo

              • perturb.py

              • perturb.pyc

              • perturb.pyo

              • plotting.py

              • plotting.pyc

              • plotting.pyo

              • rtb.py

              • rtb.pyc

              • rtb.pyo

              • rtbtools.so

              • sampling.py

              • sampling.pyc

              • sampling.pyo

              • smtools.so

              • vmdfile.py

              • vmdfile.pyc

              • vmdfile.pyo

            • ensemble

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • conformation.py

              • conformation.pyc

              • conformation.pyo

              • ensemble.py

              • ensemble.pyc

              • ensemble.pyo

              • functions.py

              • functions.pyc

              • functions.pyo

              • pdbensemble.py

              • pdbensemble.pyc

              • pdbensemble.pyo

            • kdtree

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • kdtree.py

              • kdtree.pyc

              • kdtree.pyo

            • measure

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • contacts.py

              • contacts.pyc

              • contacts.pyo

              • measure.py

              • measure.pyc

              • measure.pyo

              • transform.py

              • transform.pyc

              • transform.pyo

            • proteins

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • blastpdb.py

              • blastpdb.pyc

              • blastpdb.pyo

              • blastpdbUniProtKB.py

              • blastpdbUniProtKB.pyc

              • blastpdbUniProtKB.pyo

              • ciffile.py

              • ciffile.pyc

              • ciffile.pyo

              • compare.py

              • compare.pyc

              • compare.pyo

              • dssp.py

              • dssp.pyc

              • dssp.pyo

              • emdfile.py

              • emdfile.pyc

              • emdfile.pyo

              • functions.py

              • functions.pyc

              • functions.pyo

              • header.py

              • header.pyc

              • header.pyo

              • localpdb.py

              • localpdb.pyc

              • localpdb.pyo

              • pdbclusters.py

              • pdbclusters.pyc

              • pdbclusters.pyo

              • pdbfile.py

              • pdbfile.pyc

              • pdbfile.pyo

              • pdbligands.py

              • pdbligands.pyc

              • pdbligands.pyo

              • starfile.py

              • starfile.pyc

              • starfile.pyo

              • stride.py

              • stride.pyc

              • stride.pyo

              • wwpdb.py

              • wwpdb.pyc

              • wwpdb.pyo

            • sequence

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • analysis.py

              • analysis.pyc

              • analysis.pyo

              • msa.py

              • msa.pyc

              • msa.pyo

              • msafile.py

              • msafile.pyc

              • msafile.pyo

              • msaio.so

              • msatools.so

              • plotting.py

              • plotting.pyc

              • plotting.pyo

              • seqtools.so

              • sequence.py

              • sequence.pyc

              • sequence.pyo

            • tests

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • apps

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_prody_anm.py

                • test_prody_anm.pyc

                • test_prody_anm.pyo

                • test_prody_catdcd.py

                • test_prody_catdcd.pyc

                • test_prody_catdcd.pyo

                • test_prody_examples.py

                • test_prody_examples.pyc

                • test_prody_examples.pyo

                • test_prody_gnm.py

                • test_prody_gnm.pyc

                • test_prody_gnm.pyo

                • test_prody_pca.py

                • test_prody_pca.pyc

                • test_prody_pca.pyo

              • atomic

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_atomic.py

                • test_atomic.pyc

                • test_atomic.pyo

                • test_atommap.py

                • test_atommap.pyc

                • test_atommap.pyo

                • test_fragment.py

                • test_fragment.pyc

                • test_fragment.pyo

                • test_hierview.py

                • test_hierview.pyc

                • test_hierview.pyo

                • test_select.py

                • test_select.pyc

                • test_select.pyo

                • test_subset.py

                • test_subset.pyc

                • test_subset.pyo

              • datafiles

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • anm1ubi_evalues.dat

                • anm1ubi_hessian.coo

                • anm1ubi_vectors.dat

                • dcd2k39_truncated.dcd

                • gnm1ubi_evalues.dat

                • gnm1ubi_kirchhoff.coo

                • gnm1ubi_vectors.dat

                • msa_Cys_knot.fasta

                • msa_Cys_knot.slx

                • msa_Cys_knot.sth

                • msa_Cys_knot_di.dat

                • msa_Cys_knot_sca.dat

                • pdb1ejg.pdb

                • pdb1ejg_oneatom.pdb

                • pdb1r19_dssp.pdb

                • pdb1ubi.pdb

                • pdb1ubi_ca.pdb

                • pdb2gb1_truncated.pdb

                • pdb2k39_truncated.pdb

                • pdb3mht.pdb

                • pdbRTER.pdb

                • rtb2gb1_hessian.coo

                • rtb2gb1_project.coo

                • xmlSTI.xml

              • dynamics

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_editing.py

                • test_editing.pyc

                • test_editing.pyo

                • test_enms.py

                • test_enms.pyc

                • test_enms.pyo

              • ensemble

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_conformation.py

                • test_conformation.pyc

                • test_conformation.pyo

                • test_ensemble.py

                • test_ensemble.pyc

                • test_ensemble.pyo

                • test_functions.py

                • test_functions.pyc

                • test_functions.pyo

                • test_pdbensemble.py

                • test_pdbensemble.pyc

                • test_pdbensemble.pyo

              • kdtree

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_kdtree.py

                • test_kdtree.pyc

                • test_kdtree.pyo

              • measure

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_contacts.py

                • test_contacts.pyc

                • test_contacts.pyo

                • test_measure.py

                • test_measure.pyc

                • test_measure.pyo

                • test_transform.py

                • test_transform.pyc

                • test_transform.pyo

              • proteins

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_dssp.py

                • test_dssp.pyc

                • test_dssp.pyo

                • test_header.py

                • test_header.pyc

                • test_header.pyo

                • test_localpdb.py

                • test_localpdb.pyc

                • test_localpdb.pyo

                • test_pdbfile.py

                • test_pdbfile.pyc

                • test_pdbfile.pyo

                • test_wwpdb.py

                • test_wwpdb.pyc

                • test_wwpdb.pyo

              • sequence

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_analysis.py

                • test_analysis.pyc

                • test_analysis.pyo

                • test_msa.py

                • test_msa.pyc

                • test_msa.pyo

                • test_msafile.py

                • test_msafile.pyc

                • test_msafile.pyo

                • test_sequence.py

                • test_sequence.pyc

                • test_sequence.pyo

              • trajectory

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_dcdfile.py

                • test_dcdfile.pyc

                • test_dcdfile.pyo

                • test_frame.py

                • test_frame.pyc

                • test_frame.pyo

              • utilities

                • __init__.py

                • __init__.pyc

                • __init__.pyo

                • test_checkers.py

                • test_checkers.pyc

                • test_checkers.pyo

                • test_misctools.py

                • test_misctools.pyc

                • test_misctools.pyo

                • test_pathtools.py

                • test_pathtools.pyc

                • test_pathtools.pyo

            • trajectory

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • dcdfile.py

              • dcdfile.pyc

              • dcdfile.pyo

              • frame.py

              • frame.pyc

              • frame.pyo

              • psffile.py

              • psffile.pyc

              • psffile.pyo

              • trajbase.py

              • trajbase.pyc

              • trajbase.pyo

              • trajectory.py

              • trajectory.pyc

              • trajectory.pyo

              • trajfile.py

              • trajfile.pyc

              • trajfile.pyo

            • utilities

              • __init__.py

              • __init__.pyc

              • __init__.pyo

              • checkers.py

              • checkers.pyc

              • checkers.pyo

              • doctools.py

              • doctools.pyc

              • doctools.pyo

              • logger.py

              • logger.pyc

              • logger.pyo

              • misctools.py

              • misctools.pyc

              • misctools.pyo

              • pathtools.py

              • pathtools.pyc

              • pathtools.pyo

              • settings.py

              • settings.pyc

              • settings.pyo

    • share

      • doc

        • python2-ProDy-1.9.4

          • README.rst

      • licenses

        • python2-ProDy-1.9.4

          • LICENSE.rst