[ol8_developer_EPEL] bowtie-1.2.3-2.el8.x86_64

Bowtie, an ultrafast, memory-efficient short read aligner for short
DNA sequences (reads) from next-gen sequencers. Please cite: Langmead
B, et al. Ultrafast and memory-efficient alignment of short DNA
sequences to the human genome. Genome Biol 10:R25.

Filelist (Show Changelog) (Show related packages)

• /

  • usr

    • bin

      • bowtie

      • bowtie-align-l

      • bowtie-align-l-debug

      • bowtie-align-s

      • bowtie-align-s-debug

      • bowtie-build

      • bowtie-build-l

      • bowtie-build-l-debug

      • bowtie-build-s

      • bowtie-build-s-debug

      • bowtie-inspect

      • bowtie-inspect-l

      • bowtie-inspect-l-debug

      • bowtie-inspect-s

      • bowtie-inspect-s-debug

    • lib

      • .build-id

        • 27

          • 59d430d736c2cae75324f120cca545ea9f75a6

        • 29

          • e2ac555f5c7fe5129f4f706a582469d62eb1b3

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        • 33

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        • 4e

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        • 61

          • bbad92bf3a6572504ff2d98c12f0d1dc9375f4

        • 7e

          • 17213329786a9499ef22f5447bf4121659ff9c

        • 90

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        • 99

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          • 4adc6c03bdc1d045067da26a57b818d91d2484

        • a5

          • ef1e0fc066376308dfbc2e64bc1a5fecee38d7

        • bd

          • 6871c3f08b495442b67c489f0b80528408b4d6

    • share

      • bowtie

        • genomes

          • NC_008253.fna

        • indexes

          • e_coli.1.ebwt

          • e_coli.2.ebwt

          • e_coli.3.ebwt

          • e_coli.4.ebwt

          • e_coli.README

          • e_coli.rev.1.ebwt

          • e_coli.rev.2.ebwt

        • reads

          • e_coli_1000.fa

          • e_coli_1000.fq

          • e_coli_1000.raw

          • e_coli_10000snp.fa

          • e_coli_10000snp.fq

          • e_coli_1000_1.fa

          • e_coli_1000_1.fq

          • e_coli_1000_2.fa

          • e_coli_1000_2.fq

          • e_coli_1000_interleaved.fq

        • scripts

          • best_verify.pl

          • bowtie-hbb.sh

          • bs_mapability.pl

          • build_test.sh

          • colorize_fasta.pl

          • colorize_fastq.pl

          • convert_quals.pl

          • fastq_to_tabbed.pl

          • gen_2b_occ_lookup.pl

          • gen_dnamasks2colormask.pl

          • gen_occ_lookup.pl

          • gen_solqual_lookup.pl

          • infer_fraglen.pl

          • make_a_thaliana_tair.sh

          • make_b_taurus_UMD3.sh

          • make_c_elegans.sh

          • make_canFam2.sh

          • make_d_melanogaster.sh

          • make_e_coli.sh

          • make_galGal3.sh

          • make_h_sapiens_ncbi36.sh

          • make_h_sapiens_ncbi37.sh

          • make_hg18.sh

          • make_hg19.sh

          • make_m_musculus_ncbi37.sh

          • make_mm8.sh

          • make_mm9.sh

          • make_rn4.sh

          • make_s_cerevisiae.sh

          • mapability.pl

          • pe_verify.pl

          • reconcile_alignments.pl

          • reconcile_alignments_pe.pl

          • run-hbb.sh

      • doc

        • bowtie

          • AUTHORS

          • MANUAL

          • NEWS

          • TUTORIAL

          • VERSION

          • manual.html

          • style.css

      • licenses

        • bowtie

          • GPL.txt

          • LGPL.txt

          • LICENSE